Common DFOS tools:
Documentation
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dfos
= Data Flow Operations System, the common tool set for DFO |
make
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DFOS installation
Find here a description of how to setup a new operational dfos installation.
We assume that you have already somewhere else an operational dfos system and that you
either want to adapt this on a new platform, or copy and adapt it to a new account. Therefore,
we focus on the aspect of how to adapt the .dfosrc file and assume that anything else is
then simply copied from the old ("reference") site to the new installation.
Throughout this documentation, we assume that you already have
an operational account, that it is properly set up and that you are familiar
with the DFO workflows.
1. Prepare your account and install the initialization file:
.dfosrc
The .dfosrc file defines environment variables which in turn define
the system-wide tree structure (like $DFO_RAW_DIR), instrument-specific variables
(e.g. $DFO_FILE_NAME) and account-specific variables (e.g. password files).
- Create $HOME/install. This will become your $DFO_INSTALL_DIR.
- open a browser session; set up your browser properly (dfos
uses it for many tasks, including as active GUI)
-
go to |
dfos |
and download dfosrc.tar into your $DFO_INSTALL_DIR; untar (tar
-xvf dfosrc.tar) |
- or: copy your existing .dfosrc into your new installation
- read the
documentation
- move the file as '.dfosrc' to your $HOME directory; fill/edit
as appropriate
- create the directory structure defined in .dfosrc
- make sure .dfosrc is sourced properly whenever you log in.
The standard procedure is to have a line '. $HOME/.dfosrc' included in the
.qcrc file.
Now you have finished the first and most important step towards
your successful dfos installation.
2. Install dfosExplorer, the tool to manage your dfos installation
If you want to use dfosExplorer for the new installation:
- mkdir $DFO_INSTALL_DIR/dfosExplorer
- go to the 'details' link under 'Tool kit'
- click on 'download dfosExplorer' ; click on 'Save link target
as' ; download dfosLog.tar into your $DFO_INSTALL_DIR; untar it (tar -xvf
dfosExplorer.tar).
- click on 'description: dfosExplorer' and read the documentation
- read the README file and follow its suggestions. You don't
need to edit config.dfosExplorer for the time being.
- type 'dfosExplorer' on the command line. You will get lots
of messages "... is not installed".
- Your browser will display $DFO_MON_DIR/dfosExplorer.html.
This page now is the reference page for your dfos installation. It's a good
idea to make it, for the time being, your home page, or at least bookmark
it.
If you want to copy dfosExplorer to your new account, that's fine. Saves
you reading the above.
Special case: phoenix installation. Check out here how to proceed. Most of the installation can be done with updating the .dfosrc file and calling 'dfosExplorer'. This tool is PHOENIX aware and downloads a specific reference installation file.
3. Tune your browser, to become an active and useful part of
the dfos package:
If not yet done, tune your browser properly. Read here
how to proceed.
4. Read documentation
Click on 'help', read the short help. To read the extended help,
click on 'dfos', and select 'dfosExplorer' on the horizontal
navigation bar.
5. Copy all other components
You are now ready to copy the other dfos components from your reference installation to the new site.
Make sure you adapt the configuration to your new site.
Last update: April 26, 2021 by rhanusch
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